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https://hdl.handle.net/123456789/988| Τύπος: | Άρθρο σε επιστημονικό περιοδικό |
| Τίτλος: | Toward a global public repository of community protocols to encourage best practices in biomolecular ocean observing and research |
| Συγγραφέας: | [EN] Samuel, Robyn [DE] Meyer, Raïssa [EN] Buttigieg, Pier Luigi [EN] Davies, Neil [EN] Jeffery, Nicholas [EN] Meyer, Christopher [EL] Παυλούδη, Χριστίνα[EN] Pavloudi, Christina [EN] Pitz, Kathleen [EN] Sweetlove, Maxime [EN] Theroux, Susanna [EN] van de Kamp, Jodie [EN] Watts, Alison Weatherly |
| Ημερομηνία: | 11/10/2021 |
| Περίληψη: | Biomolecular ocean observing and research is a rapidly evolving field that uses omics approaches to describe biodiversity at its foundational level, giving insight into the structure and function of marine ecosystems over time and space. It is an especially effective approach for investigating the marine microbiome. To mature marine microbiome research and operations within a global ocean biomolecular observing network (OBON) for the UN Decade of Ocean Science for Sustainable Development and beyond, research groups will need a system to effectively share, discover, and compare “omic” practices and protocols. While numerous informatic tools and standards exist, there is currently no global, publicly-supported platform specifically designed for sharing marine omics [or any omics] protocols across the entire value-chain from initiating a study to the publication and use of its results. Toward that goal, we propose the development of the Minimum Information for an Omic Protocol (MIOP), a community-developed guide of curated, standardized metadata tags and categories that will orient protocols in the value-chain for the facilitated, structured, and user-driven discovery of suitable protocol suites on the Ocean Best Practices System. Users can annotate their protocols with these tags, or use them as search criteria to find appropriate protocols. Implementing such a curated repository is an essential step toward establishing best practices. Sharing protocols and encouraging comparisons through this repository will be the first steps toward designing a decision tree to guide users to community endorsed best practices. |
| Γλώσσα: | Αγγλικά |
| Σελίδες: | 8 |
| DOI: | 10.3389/fmars.2021.758694 |
| EISSN: | 2296-7745 |
| Θεματική κατηγορία: | [EL] Ιατρική, άλλοι τομείς[EN] Medicine, miscellaneous |
| Λέξεις-κλειδιά: | omics; eDNA; ocean best practice; ocean observations; metadata; protocol management; methods |
| Κάτοχος πνευματικών δικαιωμάτων: | © The Author(s) 2021 |
| Όροι και προϋποθέσεις δικαιωμάτων: | This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
| Ηλεκτρονική διεύθυνση του τεκμηρίου στον εκδότη: | https://www.frontiersin.org/articles/10.3389/fmars.2021.758694/full |
| Ηλεκτρονική διεύθυνση περιοδικού: | https://www.frontiersin.org/journals/marine-science |
| Τίτλος πηγής δημοσίευσης: | Frontiers in Marine Science |
| Τεύχος: | October 2021 |
| Τόμος: | 8 |
| Σελίδες τεκμηρίου (στην πηγή): | Article no 758694 |
| Σημειώσεις: | CP was supported by BIOIMAGING-GR (MIS 5002755) implemented under “Action for Strengthening Research and Innovation Infrastructures” funded by the Operational Programme “Competitiveness, Entrepreneurship and Innovation” (NSRF 2014–2020) and co-financed by Greece and the European Union (European Regional Development Fund), ECCO (project ID 343) funded by the 1st call for the support of Post-doctoral Researchers by the Hellenic Foundation for Research and Innovation (HFRI) and FutureMARES (grant agreement N° 869300) funded by the European Union’s Horizon 2020 Research and Innovation Programme. In addition, CP’s research is co-financed by Greece and the European Union (European Social Fund- ESF) through the Operational Programme «Human Resources Development, Education and Lifelong Learning» in the context of the project “Reinforcement of Postdoctoral Researchers—2nd Cycle” (MIS-5033021), implemented by the State Scholarships Foundation (IKY). |
| Εμφανίζεται στις συλλογές: | Μεταδιδακτορικοί ερευνητές |
Αρχεία σε αυτό το τεκμήριο:
| Αρχείο | Περιγραφή | Σελίδες | Μέγεθος | Μορφότυπος | Έκδοση | Άδεια | |
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| Δημοσιεύσεις-15-22.pdf | 1.46 MB | Adobe PDF | Δημοσιευμένη/του Εκδότη |  | Δείτε/ανοίξτε |